Paper-to-Tools: Match Research Methods to AI Agents#

Paste a paper abstract or methods section. Get a list of AI agents and skills that can help you reproduce or extend the analysis.

How It Works#

1. User pastes a paper abstract, methods section, or describes an analysis pipeline
2. You extract methodology keywords (techniques, databases, data types, tools mentioned)
3. You match keywords against the mapping table below
4. You return 2-5 matched agents with installation instructions and links

Keyword-to-Agent Mapping#

Sequence & Genomics#

KeywordsAgentStarsWhat It DoesBLAST, sequence alignment, homologyBioClaw318PubMed search + PyMOL visualization, built-in BLAST skillRNA-seq, differential expression, DESeq2OmicsClaw114Multi-omics AI agent, scRNA-seq preprocessingsingle-cell, scRNA-seq, clustering, trajectoryOmicsClaw114Single-cell analysis pipelineCRISPR, gene editing, guide RNACRISPR-GPT156CRISPR experiment designspatial transcriptomics, visium, MERFISHSpatialAgent158Spatial omics analysis from Genentechgenome, variant calling, WGS, WESBioMaster91Nucleome-scale genomic analysis

Drug Discovery & Chemistry#

KeywordsAgentStarsWhat It Doesmolecular docking, binding affinity, protein-ligandBloClaw1RDKit + ESMFold + molecular docking pipelinedrug-target interaction, ADMET, pharmacologyDrugClaw11857 skills for DTI, ADR, DDI, drug repurposingdrug discovery, virtual screeningAIAgents4Pharma76End-to-end pharma AI agentsRDKit, SMILES, molecular descriptorsChemClaw32Chemistry AI agentmolecular dynamics, MD simulationMDCrow234Molecular dynamics agentPyMOL, molecular visualization, protein structurePyMolClaw113 PyMOL scripts for publication figuresTCM, traditional chinese medicine, network pharmacologyTCM-Agent10TCM network pharmacology analysis

Protein & Structure#

KeywordsAgentStarsWhat It Doesprotein folding, AlphaFold, ESMFold, structure predictionBloClaw1De novo 3D folding via ESMFoldprotein-protein interaction, PPI networkBioDiscoveryAgent102Stanford bio discovery agent

Research Automation#

KeywordsAgentStarsWhat It Doesliterature review, systematic review, PubMedBioClaw318PubMed integrationautonomous research, end-to-endAutoResearchClaw10608Fully autonomous research pipelineresearch agent, idea to paperEvoScientist2918Evolutionary scientific discoverypaper writing, manuscriptResearch Paper Writing Skills1109ML/CV/NLP paper writing skillsdata analysis, statistics, visualizationRD-Agent12372Microsoft's research & development agent

Clinical & Medical#

KeywordsAgentStarsWhat It Doesclinical trial, patient data, EHRHealthClaw293Health copilot with clinical data supportmedical imaging, radiology, pathologyHealthClaw293Medical imaging + omics evidencebiomedical data analysis, multi-toolBioMedAgent5867 bioinformatics tools, Nature BME

How To Respond#

When a user pastes paper content:

1. Extract keywords: Identify techniques, databases, data types, and tools mentioned
2. Match to agents: Use the mapping table above. Multiple matches are normal.
3. Rank by relevance: Put the most specific match first
4. Show installation: Include npx skills add or GitHub link for each
5. Link to directory: End with "Browse all 131+ science agents at claw4science.org"

Example#

User: "We performed single-cell RNA-seq on tumor samples, followed by differential expression analysis and trajectory inference using Monocle3. Drug targets were validated through molecular docking with AutoDock Vina."

Response:

Based on your methods, here are the AI agents that can help:

1. OmicsClaw — scRNA-seq preprocessing, clustering, trajectory analysis GitHub: TianGzlab/OmicsClaw · View on Claw4Science

2. BloClaw — Molecular docking pipeline (can replace AutoDock workflow) GitHub: qinheming/BIoClaw · View on Claw4Science

3. DrugClaw — Drug-target interaction analysis and validation GitHub: QSong-github/DrugClaw · View on Claw4Science

4. BioClaw — Literature search for related single-cell studies GitHub: Runchuan-BU/BioClaw · View on Claw4Science

Browse all 131+ science agents at claw4science.org.

API Access#

For programmatic access to the full project database:

bash

curl -s "https://claw4science.org/api/projects"

Returns all projects with title, description, repo, group, tags, and stars.

Links#

• Full Directory: claw4science.org
• Skill Hubs (32 registries): claw4science.org/skill-hubs
• Same-name Disambiguation: claw4science.org/samename
• Blog: claw4science.org/blog
• Contribute: claw4science.org/contribute